Background: Over the past decade the workflow system paradigm has evolved as an efficient and user-friendly approach for developing complex bioinformatics applications. Two popular workflow systems that have gained acceptance by the bioinformatics community are Taverna and Galaxy. Each system has a large user-base and supports an ever-growing repository of application workflows. However, workflows developed for one system cannot be imported and executed easily on the other. The lack of interoperability is due to differences in the models of computation, workflow languages, and architectures of

Visual Sensor Networks (VSNs) open up a new realm of smart autonomous applications based on enhanced three- dimensional sensing and collaborative reasoning. An emerging VSN application domain is pervasive healthcare delivery where gait information computed from distributed vision nodes is used for observing the wellbeing of the elderly, quantifying post-operative patient recovery and monitoring the progression of neurodegenerative diseases such as Parkinson's. The development of patient-specific gait analysis models, however, is challenging since it is unfeasible to obtain normal and impaired

Fundus fluorescein angiography (FFA) is a standard screening and diagnosis technique for several retinal diseases. The analysis of FFA images is performed qualitatively by skilled observers, and thus is vulnerable to inter- and intra-observer variability. In this study, the authors present a method for computer-aided analysis of FFA images. The method is based on generating quantitative colour fluorescein leakage maps (FLM) that mimic the thickness maps generated by the optical coherence tomography (OCT). Results from 64 patients show strong correlation between the FLM and OCT thickness maps

Non-Synonymous Single-Nucleotide Variants (nsSNVs) and mutations can create a diversity effect on proteins as changing genotype and phenotype, which interrupts its stability. The alterations in the protein stability may cause diseases like cancer. Discovering of nsSNVs and mutations can be a useful tool for diagnosing the disease at a beginning stage. Many studies introduced the various predicting singular and consensus tools that based on different Machine Learning Techniques (MLTs) using diverse datasets. Therefore, we introduce the current comprehensive review of the most popular and recent

Cloud-based scientific workflow systems can play an important role in the development of cost effective bioinformatics analysis applications. So far, most efforts for supporting cloud computing in such workflow systems have focused on simply porting them to the cloud environment. The next due steps are to optimize these systems to exploit the advantages of the cloud computing model, basically in terms of managing resource elasticity and the associated business model. In this paper, we introduce new advancements in designing scalable and cost-effective workflows in the cloud using the Tavaxy

In this paper an approach is proposed to develop a computer-aided diagnosis (CAD) system that can be very helpful for radiologist in diagnosing microcalcifications' patterns in digitized mammograms earlier and faster than typical screening programs and showed the efficiency of feature selection on the CAD system. The proposed method has been implemented in four stages: (a) the region of interest (ROI) selection of 32x32 pixels size which identifies clusters of microcalcifications, (b) the feature extraction stage is based on the wavelet decomposition of locally processed image (region of

To automate the process of segmenting an anatomy of interest, we can learn a model from previously annotated data. The learning-based approach uses annotations to train a model that tries to emulate the expert labeling on a new data set. While tremendous progress has been made using such approaches, labeling of medical images remains a time-consuming and expensive task. In this paper, we evaluate the utility of extreme points in learning to segment. Specifically, we propose a novel approach to compute a confidence map from extreme points that quantitatively encodes the priors derived from

Background: Next Generation Genome sequencing techniques became affordable for massive sequencing efforts devoted to clinical characterization of human diseases. However, the cost of providing cloud-based data analysis of the mounting datasets remains a concerning bottleneck for providing cost-effective clinical services. To address this computational problem, it is important to optimize the variant analysis workflow and the used analysis tools to reduce the overall computational processing time, and concomitantly reduce the processing cost. Furthermore, it is important to capitalize on the

Intelligent camera systems provide an effective solution for road traffic monitoring with traffic stream characteristics, such as volumes and densities, continuously computed and relayed to control stations. However, developing a functional vision-based traffic monitoring system is a complex task that entails the creation of appropriate visual sensing platforms with on-board visual analytics algorithms, integration of versatile technologies for data provision and stream management, and development of data visualization techniques suitable for end-users. This paper describes TraffiSense, a

Detecting trending topics or events from Twitter is an active research area. The first step in detecting such topics focuses on efficiently capturing textual features that exhibit an unusual high rate of appearance during a specific timeframe. Previous work in this area has resulted in coining the term "detecting bursty features" to refer to this step. In this paper, TFIDF, entropy, and stream chunking are adapted to investigate a new technique for detecting bursty features from an Arabic Twitter stream. Experimental results comparing bursty features extracted from Twitter streams, to Twitter